The Bio-Imaging Resource Center, provides a variety of image analysis resources/training to our users:
- One-on-one user imaging data discussion, where we suggest the best software/method/pipeline for image analysis
- Writing of custom image analysis scripts, pipelines, batch processing
- Regular image analysis seminars and workshops
- Image Analysis User Group meetings
- One-on-one user training
- Helpdesk session, every Wednesday, 3-5pm
In addition, we encourage our users to contact us at the experimental design stage to have a discussion with our team of microscopy and image analysis experts, to ensure that the imaging data acquired will be appropriate for the planned analysis and research questions
Softwares
We have expertise in a variety of image analysis softwares/tools, which we use to help analyze our users’ imaging data
Open-source softwares
ImageJ/Fiji, QuPath, Napari, CellProfiler, Icy
Commercial Softwares
Imaris, Arivis, Aivia, Huygens, MetaMorph
Machine/Deep Learning frameworks
Weka, ilastik, Labkit
StarDist, Cellpose, DeepImageJ, ZeroCostDL4Mic