Image Analysis @ Bio-Imaging Resource Center

The Bio-Imaging Resource Center provides a variety of image analysis resources/training to our users:

In addition, we encourage our users to contact us at the experimental design stage to have a discussion with our team of microscopy and image analysis experts, to ensure that the imaging data acquired will be appropriate for the planned analysis and research questions.

Software

We have expertise in a variety of image analysis software/tools, which we use to help analyze our users’ imaging data

Open-source software

ImageJ

Fiji

QuPath

Napari

CellProfiler

Icy

Machine/Deep Learning frameworks

Cellpose

InstanSeg

StarDist

ilastik

Weka

Labkit

DeepImageJ

ZeroCostDL4Mic

Commercial Software

Imaris

Huygens

Metamorph

Arivis, Zeiss

Aivia

Brain registration of volumetric light-sheet data

ClearMap